The eMouseAtlas resource (Armit et al 2017) uses embryological mouse models to provide a digital atlas of mouse development as a spatio-temporal framework for embryological studies. It is based on the definitive books of mouse embryonic development by Theiler (1989) and Kaufman (1992) and extends these studies by creating a series of three dimensional computer models of mouse embryos at successive stages of development with defined anatomical domains linked by an ontology of anatomical tissues. It is a 3-D anatomical atlas of mouse embryo development including detailed histology. The resource provides a series of framework models representing development and a histology atlas based on the Kaufman “Atlas of Mouse Development” (Graham et al. 2015). The EMA atlas includes the EMAPA ontology (Hayamizu et al 2013) of anatomical structures.

Resource website: www.emouseatlas.org/emap.

This e-Mouse Atlas community provides access to the data underlying the EMA and eHistology atlases including full 3D embryo model data with anatomical segmentation and labelling, high resolution histology images of mouse embryo serial sections and gene-expression mapped data for bioinformatics analysis.

Sub-communities within this community

Recent Submissions

  • 3D mouse embryo model: EMA76, Stage TS20, Age E12.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA77, Stage TS20, Age E12.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA146, Stage TS21, Age E13.0 (est) 

    Ruffins, Seth; Jacobs, Russell; Armit, Chris; Burton, Nick; Hill, Bill; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA37, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA71, Stage TS19, Age E11.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA31, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA41, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA78, Stage TS21, Age E13.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA28, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA27, Stage TS14, Age E9.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA65, Stage TS19, Age E11.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA38, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA48, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA47, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA58, Stage TS18, Age E11.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA49, Stage TS17, Age E10.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA53, Stage TS17, Age E10.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA36, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA148, Stage TS24, Age E16.0 (est) 

    Ruffins, Seth; Jacobs, Russell; Armit, Chris; Burton, Nick; Hill, Bill; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse hindlimb model: EMA109, Stage TS23, Age E14.5 

    Delaurier, April; Mohun, Tim; Logan, Malcolm; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...

View all