Bush, Stephen J. (2018). Unique placeholder IDs for each gene, transcript and exon model in the "UMD CASPUR WD 2.0" annotation of the water buffalo (Bubalis bubalis) genome assembly, [dataset]. http://dx.doi.org/10.7488/ds/2292.
The "UMD CASPUR WD 2.0" annotation of the water buffalo (Bubalis bubalis) genome assembly, as published by Williams, et al. (PMCID: PMC5737279), does not yet have a standardised set of placeholder IDs for each gene, transcript and exon model. We used the transcripts from this assembly as the basis of a large-scale gene-level expression atlas for the water buffalo. To aid in the presentation of findings, we assigned - where unavailable - placeholder IDs to all gene, transcript and exon models of this annotation. This dataset comprises this standard nomenclature, alongside coordinates of each gene, transcript and exon.
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