The McCormick Lab is interested in photosynthetic biology, with a focus on plant and micro-algal molecular physiology and synthetic biology.

Website: mccormick.bio.ed.ac.uk

Image: CC-BY Alistair McCormick

Collections in this community

Recent Submissions

  • Photometric stereo test data set 

    McCormick, Alistair; Scorza, Livia; Bernotas, Gytis
    A test data set for extracting trait data from Arabidopsis thaliana plants using PS-Plant software. The data set included raw and processed data, and a pre-trained Mask R-CNN model. This data set forms part of work done ...
  • Photometric stereo training data set with annotated leaf masks 

    Scorza, Livia; Bernotas, Gytis; McCormick, Alistair
    Automated leaf segmentation is a challenging area in computer vision. Recent advances in machine learning approaches allowed to achieve better results than traditional image processing techniques; however, training such ...
  • SUPERSEDED - Photometric stereo dataset with annotated leaf masks 

    Scorza, Livia; Bernotas, Gytis; McCormick, Alistair
    ## This item has been replaced by the one which can be found at: http://hdl.handle.net/10283/3280 ## Automated leaf segmentation is a challenging area in computer vision. Recent advances in machine learning approaches ...
  • Images - Night 18-19 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
    Improvements in high-throughput phenotyping technologies are rapidly expanding the scope and capacity of plant biology studies to measure growth traits. Nevertheless, the costs of commercial phenotyping equipment and ...
  • Manual 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
    Improvements in high-throughput phenotyping technologies are rapidly expanding the scope and capacity of plant biology studies to measure growth traits. Nevertheless, the costs of commercial phenotyping equipment and ...
  • Images - Day 18 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
    Test images to accompany manual.
  • Image - Day 19 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
    Improvements in high-throughput phenotyping technologies are rapidly expanding the scope and capacity of plant biology studies to measure growth traits. Nevertheless, the costs of commercial phenotyping equipment and ...
  • Software - source code (beta) 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
  • Software - executable for Windows (beta) 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
  • CAD files for constructing the image capture system 

    McCormick, Alistair; Dobrescu, Andrei; Scorza, Livia CT
    Improvements in high-throughput phenotyping technologies are rapidly expanding the scope and capacity of plant biology studies to measure growth traits. Nevertheless, the costs of commercial phenotyping equipment and ...