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Depositordc.contributorGranneman, Sander
Funderdc.contributor.otherWellcome Trusten_UK
Data Creatordc.creatorGranneman, Sander
Date Accessioneddc.date.accessioned2017-10-05T11:07:37Z
Date Availabledc.date.available2017-10-05T11:07:37Z
Citationdc.identifier.citationGranneman, Sander. (2017). Yeast 18S rRNA DMS RNA structure probing ChemModSeq data, [dataset]. University of Edinburgh. School of Biological Sciences. https://doi.org/10.7488/ds/2224.en
Persistent Identifierdc.identifier.urihttp://hdl.handle.net/10283/2914
Persistent Identifierdc.identifier.urihttps://doi.org/10.7488/ds/2224
Dataset Description (abstract)dc.description.abstractThese fasta files were generated from fastq files from the Hector et al NAR 2014 ChemModSeq paper ( https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gku815 ). Included are biological triplicates of 18S DMS RNA structure probing data. The data were generated using the ChemModSeq pipeline (https://bitbucket.org/sgrann/chemmodseqpipeline). The reads from the raw fastq files were trimmed using FlexBar to remove adapters and low quality nucleotides. The sequence information present in the in-read random barcodes was used to remove PCR duplicates. Thus the data in the fasta files represent unique cDNAs. The first nucleotide in the forward (_1) read data is the reverse transcriptase drop-off point.en_UK
Languagedc.language.isoengen_UK
Publisherdc.publisherUniversity of Edinburgh. School of Biological Sciencesen_UK
Relation (Is Version Of)dc.relation.isversionofhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52878en_UK
Relation (Is Referenced By)dc.relation.isreferencedbyhttps://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gku815en_UK
Relation (Is Referenced By)dc.relation.isreferencedbyHector, RD, Burlacu, E, Aitken, S, Le Bihan, T, Tuijtel, M, Zaplatina, A, Cook, AG & Granneman, S 2014, 'Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution' Nucleic Acids Research. DOI: 10.1093/nar/gku815en_UK
Rightsdc.rightsCreative Commons Attribution 4.0 International Public Licenseen
Subjectdc.subjectRNA Structureen_UK
Subjectdc.subjectChemModSeqen_UK
Subjectdc.subjectHigh-throughput sequencingen_UK
Subjectdc.subjectYeast ribosomal RNAen_UK
Subjectdc.subjectYeast ribosomal RNA structure probingen_UK
Subjectdc.subjectSaccharomyces cerevisiae
Subject Classificationdc.subject.classificationBiological Sciences::Molecular Biology Biophysics and Biochemistryen_UK
Titledc.titleYeast 18S rRNA DMS RNA structure probing ChemModSeq dataen_UK
Typedc.typedataseten_UK

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  • Granneman Lab
    Exploring the role of RNA structure and RNA binding proteins in the regulation of gene expression

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