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Depositordc.contributorBakker, Elco
Funderdc.contributor.otherBBSRC - Biotechnology and Biological Sciences Research Councilen_UK
Funderdc.contributor.otherScottish Governmenten_UK
Funderdc.contributor.otherHFSP - Human Frontier Science Programen_UK
Data Creatordc.creatorBakker, Elco
Data Creatordc.creatorBandiera, Lucia
Data Creatordc.creatorCrane, Matt
Date Accessioneddc.date.accessioned2017-09-14T15:49:34Z
Date Availabledc.date.available2018-02-01T05:15:13Z
Citationdc.identifier.citationBakker, Elco; Bandiera, Lucia; Crane, Matt. (2018). Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast, [dataset]. University of Edinburgh. https://doi.org/10.7488/ds/2140.en
Persistent Identifierdc.identifier.urihttp://hdl.handle.net/10283/2827
Persistent Identifierdc.identifier.urihttps://doi.org/10.7488/ds/2140
Dataset Description (abstract)dc.description.abstractThis is all the data associated with the paper "Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast": a description of the cell segmentation software developed in the Swain Laboratory for segmenting microscopy images of yeast (Saccharomyces cerevisiae) cells in the ALCATRAS microfluidic device. Included are the raw images, ground truth segmentation and the automated segmentations of all the software tested. The format is the data structure used with the published software (available at https://github.com/pswain/segmentation-software). The data set includes images both from our own lab (https://academic.oup.com/bioinformatics/article-abstract/doi/10.1093/bioinformatics/btx550/4103414/Morphologically-Constrained-and-Data-Informed-Cell) and from that of Professor Nan Hao (in Press at PNAS, 10.1073/pnas.1703379114). Please cite both.en_UK
Dataset Description (TOC)dc.description.tableofcontentsData set contains a single zip file of all the data. The data is divided into all files relevant to each test data set. There is a folder of raw images and a folder of data structures: 1 for each software tested and the ground truth. The naming should be self explanatory. For help accessing the datafiles see the software documentation at: https://github.com/pswain/segmentation-software Also included are the segmentation/morphology model used in our analysis and .avi movies of representative segmentation results for each data set.en_UK
Languagedc.language.isoengen_UK
Publisherdc.publisherUniversity of Edinburghen_UK
Relation (Is Referenced By)dc.relation.isreferencedbyhttp://www.biorxiv.org/content/early/2017/02/06/105106en_UK
Relation (Is Referenced By)dc.relation.isreferencedbyhttps://academic.oup.com/bioinformatics/article-abstract/doi/10.1093/bioinformatics/btx550/4103414/Morphologically-Constrained-and-Data-Informed-Cellen_UK
Rightsdc.rightsCreative Commons Attribution 4.0 International Public Licenseen
Sourcedc.sourceThis dataset contains images from the laboratory of Professor Nan Hao (see DOI: 10.1073/pnas.1703379114, PNAS, in press).en_UK
Subjectdc.subjectmicroscopyen_UK
Subjectdc.subjectsoftwareen_UK
Subjectdc.subjectsegmentationen_UK
Subjectdc.subjectbudding yeasten_UK
Subjectdc.subjectSaccharomyces cerevisiaeen_UK
Subjectdc.subjectALCATRASen_UK
Subject Classificationdc.subject.classificationBiological Sciencesen_UK
Titledc.titleMorphologically Constrained and Data Informed Cell Segmentation of Budding Yeasten_UK
Typedc.typedataseten_UK

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