The eMouseAtlas embryo models capture detailed knowledge of mouse embryo anatomy and provide a spatial framework for annotating and analysing gene-expression and other spatially organised data. The 3-dimensional image data has been carefully collated to provide representative embryos for each stage of development and expert developmental anatomists have checked the anatomical delineations. Each model is provided as a dataset with both the native woolz image format and the open-standard NIfTI format. The woolz image data can be viewed using the tools from the GitHub ma-tech repository and the NIfTI files can be viewed using ITK-Snap or any number of other image viewing applications. For all models with delineated anatomy, 3D surface data in stereo-lithography (stl) format is also provided.

Resource website: http://www.emouseatlas.org/emap/ema/home.php

This 3D Embryo Models community provides access to the full image data and anatomy segmentations for each 3D embryo model of the eMouseAtlas resource.

Collections in this community

Recent Submissions

  • 3D mouse embryo model: EMA76, Stage TS20, Age E12.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA77, Stage TS20, Age E12.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA146, Stage TS21, Age E13.0 (est) 

    Ruffins, Seth; Jacobs, Russell; Armit, Chris; Burton, Nick; Hill, Bill; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA37, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA71, Stage TS19, Age E11.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA31, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA41, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA78, Stage TS21, Age E13.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA28, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA27, Stage TS14, Age E9.0 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA65, Stage TS19, Age E11.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA38, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA48, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA47, Stage TS16, Age E10.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA58, Stage TS18, Age E11.0 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA49, Stage TS17, Age E10.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA53, Stage TS17, Age E10.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA36, Stage TS15, Age E9.5 (est) 

    Graham, Elizabeth; Moss, Julie; Richardson, Lorna; Brune, Renske; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse embryo model: EMA148, Stage TS24, Age E16.0 (est) 

    Ruffins, Seth; Jacobs, Russell; Armit, Chris; Burton, Nick; Hill, Bill; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...
  • 3D mouse hindlimb model: EMA109, Stage TS23, Age E14.5 

    Delaurier, April; Mohun, Tim; Logan, Malcolm; Armit, Chris; Burton, Nick; Hill, Bill; Davidson, Duncan; Baldock, Richard
    The eMouseAtlas team have generated a series of 3D images to capture mouse embryo development and to use as a spatial framework for gene-expression and other spatially organised data. The resource is published and available ...

View all